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rs27641686 SNP Detail
Summary
  • ID
    rs27641686
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:179988703 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GATTCCTTGC ATGCTTGCTG
    GCTTCCCTTG TGCCCAGTCC AGGCTAGAAT CCGGACTGTG CTTTCTTTAT GAAAACCATC
    CTGGCCATCA GCCACCGAGC CTCCCCACAG GTCTTGCACA GAAGGCCGAG GGTACTGTGC
    AGAGGAAGAC CCAGTTCTGG TTCTGCATGG GGCTCAGCTG TCCTGGCCCT TTAGGTCTGA
    R
    TTGTTCTACA GACTTCCTGT TCTCACCCCT TCTCTCTGCA GTGAGAGGAG ATGGTGGGCC
    CTACTCCATG GTCAGCCTGG GTAACTCTAC ACAAAGGGAC AGCTCTGGCC ATGCTTGCAC
    CTAGTAGGTC TCCAGGACTC TGATAAGCTT TGGAGGCTTC CTCTTGGAGC GTGTTCCTGA
    TGGACACCCC GAAGTGAGGT                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss37836505 NES08685846 PERLEGEN MM_PANEL2 f SNP A A A A A A G A A A A A A G A
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
FVB/NJ
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs27641686 SNP A A A A A A G A A A A A A G A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss37836505 NES08685846 PERLEGEN MM_PANEL f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:179988703 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm52543 predicted gene, 52543 419 bp upstream
Gm75553 predicted gene, 75553 within coordinates
Rr572721 regulatory region 572721 within coordinates
Rr572722 regulatory region 572722 394 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory