rs27641691 SNP Detail

Summary

• ID
  rs27641691
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179988400 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGGC CCTCTGTCAA GGAGACAAAC
  R
  GAGGATGTTG GCTGAACACC TGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37836510	NES08685841	PERLEGEN	MM_PANEL2	f	SNP	G	A	A	G	A	G	A	G	G		G	G	A		G
ss320631885	CHEV_2_180081312	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs27641691					SNP	G	A	A	G	A	G	A	G	G	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836510	NES08685841	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179988400 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	116 bp upstream
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	82 bp proximal
Rr572722	regulatory region 572722	697 bp proximal