rs27641692 SNP Detail

Summary

• ID
  rs27641692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179988223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGCCCCCCCA AGCATTACCT
  GAGAGGTACC TGGAGTTCTT AGGGCCTTTG GGGTCCCTGG CAGATATCAA GGGTCAGGCA
  TGCCGGTGAG TAGTTCTCAG CCCAGAGTGT CAGGATGGGC TACGTTGGCA CCCACCTGTC
  AGAACTGCCC TCTTTGGGAA GTAGGTTGGG TCCCCAGGAA ACTGTAGCCT CTGGAGTGGG
  Y
  GAGGAGATCT GTGTCAGGCG TGGCTTTCTC CAGAAGCCCT GCCTGCCTGC TCTGGCCCCT
  AGCACCTTCA CTTTAGCCCA GCCACTGTCT GGTGAGGGTC CCTTCTCATC CTCCTGAGCA
  GATGGGAATA GGTTAAGGCC TGAGGGGCCC TTTGGCCCTC TGTCAAGGAG ACAAACAGAG
  GATGTTGGCT GAACACCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37836511	NES08685840	PERLEGEN	MM_PANEL2	f	SNP	C	T	T	C	T	T	T		T	C	T	T		C
ss320631884	CHEV_2_180081135	CHEVERUD	SCREENING_POP	f	SNP								T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27641692					SNP	C	T	T	C	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836511	NES08685840	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179988223 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	259 bp proximal
Rr572722	regulatory region 572722	874 bp proximal