rs27641695 SNP Detail

Summary

• ID
  rs27641695
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179987878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGCAATGC TGTGGTGAGA
  GGGTGGGTGA GTGTGGGCAT GTTAATATCA GCTTCAGAGG AAGGGAAGCC GAGGCCTTGG
  ATCTCTAGAG TGAGGGCTCT TTCTAGGAAC CCTGGCCCTG GCCTATGTGC ACAGACAGAG
  TACCAGGGGC TTGGGCTCAC TTCCTTTCTC TAAAAGAGGT TCCGGGAAAT GTTGGCTGGC
  R
  TGGAAAACCA GCAGACTAAA TATAGCGGTG GAACTTCCTG GAACACATTA TTATGAATGT
  CTGATAATTA ATGTCAAACA GTAGCACCTT CCAGAAATCT GAATCCACCC TGCATATCCA
  ATTGATTGGT AGGAGTTATT TCAACGCCCC CCCAAGCATT ACCTGAGAGG TACCTGGAGT
  TCTTAGGGCC TTTGGGGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37836514	NES08685837	PERLEGEN	MM_PANEL2	f	SNP	G		A	A	G	A		A	A	A	A		A	G	A	A		G
ss45249205	mCV22941105	ABI	CRAMUS_MOUSE	f	SNP		G	A				A		A
ss320631882	CHEV_2_180080790	CHEVERUD	SCREENING_POP	f	SNP												A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27641695					SNP	G	G	A	A	G	A	A	A	A	A	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836514	NES08685837	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179987878 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	within coordinates
Rr572721	regulatory region 572721	604 bp proximal
Rr572722	regulatory region 572722	1219 bp proximal