rs27641702 SNP Detail

Summary

• ID
  rs27641702
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179987145 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGGTGGG GAGACTACAT
  TAGGTGACTT GTTAACAAAT TCCGGGATAT CTGGAGAACA ATTACTCTGC CTATAAGGAG
  AGGTTGCTAT TGCCCCCATT TTACAGATAA GGAACTTAGA GGCCTCAGAC TGGCTATGCA
  GCTTGTTCAG CACCCCCAGA ATCAGATAAA AGAACTTGCA TGCATAACAA AACTAAAGAA
  Y
  CTCAACCCCA TCAGACAACA CACACATCAC AGGTCACCCA GTTTGCTGGG GACCCTCAGA
  ATGGAAACCA AGGCCCCCGC AAAGGCAGAT GACCTATCTG AGGTTATGTT GAGTGGGACC
  CTAAACCTCC TGCTGACTCC TCCATGTCTG AGTGGGCACT CTGACATCTC AGGATGTCAG
  GATGTCTGTC TGTGCAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836521	NES08685877	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27641702					SNP	T	T	T	T	T	T	C	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836521	NES08685877	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179987145 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	within coordinates
Rr572720	regulatory region 572720	1438 bp distal
Rr572721	regulatory region 572721	1337 bp proximal
Rr572722	regulatory region 572722	1952 bp proximal