rs27641717 SNP Detail

Summary

• ID
  rs27641717
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179985007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCAGGGTT GGCAAGGAAG
  CAGGGCTAGC TGTGTTTTTC ACCATTTGCA TGGGTAAAGC CTTTTTACAT CAGCTACCCC
  ACTGCCCATA GACTGAGAGC CCCTTTGCCC ATTCTGTGGA TCTCATCTGG GTCTTTTTAG
  ATCCCGTACT TGGTTTCTAC TCATCGTTGC CTGTAGGCTT CTGCCTCTTC TGCCAGAACC
  R
  ACACCTCCCA GGAAAATGCC CTGGCACAGC AAACAGGCAG CCGTGGACTT TGAGCCTGGG
  CCACGGCAGT GAGAAGGCGT TTCCCGGCAC AGACGGCTCT GACCTTTGCG GCACCCCAAA
  TGCAGATGGA ATGGAGGGCT TGTCTTGGCA ATTGGGCGCG GGTGGGTTGG AGCAGGAGGG
  CGAGGGTCCT CCCTGAGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37836536	NES08685956	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	A	G		G	G	G	G		G	A	G	G		G
ss45213027	mCV22941106	ABI	CRAMUS_MOUSE	f	SNP		A	G				G		G
ss148390590	ENSMUSSNP3771680	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
ss320631879	CHEV_2_180077919	CHEVERUD	SCREENING_POP	f	SNP												G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27641717					SNP	A	A	G	G	A	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836536	NES08685956	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179985007 () rs orientation: forward

Symbol	Name	Function Class
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	within coordinates
Rr572719	regulatory region 572719	1418 bp distal
Rr572720	regulatory region 572720	within coordinates