rs27641727 SNP Detail

Summary

• ID
  rs27641727
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179983490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAAAGAGC CCCCCCCCCC
  GGGTGGCCTG GCTTCTCTAG CTGGTGGCTC TGGGTGCTGA GAGGAATGCC CGGCACCCAG
  CGTGTTCACT GGGGACCACT GTCTCTGCTA TGGCCCAGGG TGAGCAAGCT TTTCTTTCCT
  AGAGTCTTTC TACGCTTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGGCAACACC
  Y
  AGTGAGCACA CAGAAGTATC GAGCACCTCC TGAACCTCAT GGGAGGTGAA GGTGTGTGGT
  GGCACAGGGA GGTAAACGCA GGTGTCATGG TGGGGAGGGC TGTGGGGAGA GGGACAGGGA
  GTTTTGCCTT TTTAGACTGT AGGGGTCTTT GTGAGGCAGA GAAGCCCACC CATTCCTGTA
  CCTTGCTTGG GGAATGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836546	NES08686051	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27641727					SNP	C	C	C	C	C	C	C	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836546	NES08686051	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179983490 () rs orientation: forward

Symbol	Name	Function Class
Gata5os	GATA binding protein 5, opposite strand	965 bp downstream
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	within coordinates
Rr572718	regulatory region 572718	1253 bp distal
Rr572719	regulatory region 572719	within coordinates
Rr572720	regulatory region 572720	1281 bp proximal