rs27641728 SNP Detail

Summary

• ID
  rs27641728
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179983442 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGTGCTGAGA GGAATGCCCG GCACCCAGCG TGTTCACTGG
  GGACCACTGT CTCTGCTATG GCCCAGGGTG AGCAAGCTTT TCTTTCCTAG AGTCTTTCTA
  Y
  GCTTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGG CAACACCCAG TGAGCACACA
  GAAGTATCGA GCACCTCCTG AACCTCATGG GAGGTGAAGG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37836547	NES08686049	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27641728					SNP	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836547	NES08686049	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179983442 () rs orientation: forward

Symbol	Name	Function Class
Gata5os	GATA binding protein 5, opposite strand	917 bp downstream
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	within coordinates
Rr572718	regulatory region 572718	1205 bp distal
Rr572719	regulatory region 572719	within coordinates
Rr572720	regulatory region 572720	1329 bp proximal