rs27641731 SNP Detail

Summary

• ID
  rs27641731
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:179982854 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTGCC AGCCTGAACA
  GAGAGGGAGC ATATTGTCTT TGACACTCAG TGAGAAGTGC CCTAAGCCCT CTTGTGGCTT
  CACTTTCTGT CTGAGCTCCA TCATGTAGAG GTTTGGGAGG GAGGATACAG AGCTGAGCCG
  CCAAGCTCTT TGCTGAACTC TCAGGCAAGA GCACTGGGCC ATTCATGTCC TCAGAGCAGC
  Y
  CCAGTTCGTG CATCCAGCCT ACCCAGGACT CACTAAGTAG TCGCCTGGTT GTGATTCCAC
  CTCCAGGGCT GACAGACTGG TAGTCATTTC TCCCTGACTG TTCTCCATGA TGTCTGCCTT
  GCCCAGCCAC CATTAGAGTC TGTCCCAGGC TGTGCCTGCC TCTGAACCCT GTCTGGAAGT
  TGCCTTTCTC CTGAGGAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37836550	NES08686041	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C		C	C	C	C		C	T	C	C		C
ss45276610	mCV22941115	ABI	CRAMUS_MOUSE	f	SNP		T	C				C		C
ss148390580	ENSMUSSNP4834556	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
ss320631875	CHEV_2_180075766	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27641731					SNP	T	T	C	C	T	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37836550	NES08686041	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:179982854 () rs orientation: forward

Symbol	Name	Function Class
Gata5os	GATA binding protein 5, opposite strand	329 bp downstream
Gm52543	predicted gene, 52543	within coordinates
Gm75553	predicted gene, 75553	495 bp upstream
Rr572718	regulatory region 572718	617 bp distal
Rr572719	regulatory region 572719	219 bp proximal
Rr572720	regulatory region 572720	1917 bp proximal