rs27641937 SNP Detail

Summary

• ID
  rs27641937
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180123359 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTGAGAGG AGAGGGGACA GGGTGAGAGG AAGGGGCTAG
  CAGGGGTGAG TGGCAATGGG TGAGCAGGAA GGGTGTGGAG AGGCATGCAG GGTCTGAGCA
  R
  CCGCTGAGAG GAGCTCTGAA GCAGCGCAGT GCAAGCTCCC CCCCACCCCC ACGCTCCTTT
  TCACTTGTCT GAGACAGGTG GGTTTCTCCT TTTGTCTTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37835456	NES08681663	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	A	G	G	A	A		G	G	A		G
ss148392689	ENSMUSSNP5444658	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					G
ss320632271	CHEV_2_180216271	CHEVERUD	SCREENING_POP	f	SNP											A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27641937					SNP	G	G	G	G	G	A	G	G	A	A	A	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835456	NES08681663	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180123359 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12896	CpG island 12896	903 bp proximal