rs27641940 SNP Detail

Summary

• ID
  rs27641940
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180122581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTGAGTGATT CCTGTACACA CTGTACCCTC TAATCATGCA
  AGGGCTTCGT AGACTCTTTA ACTCATGCCT CAGTTTCCCT ACTTCCAGAA AAGGGTGATA
  S
  CATGGCCTGG CTTCACCAAG GCCTTATTTC TAATGAATGC AGGTTTTATT AAATAACCAA
  AGGCATCCTC ACCCTGGTTT GACAGAGAAA GAAATGGCA                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37835459	NES08681660	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	C	G		G	C	C		G	G	C		G
ss45343966	mCV25371981	ABI	CRAMUS_MOUSE	f	SNP	G	G					C	G
ss148392654	ENSMUSSNP211802	ENSEMBL	ENSEMBL_Sanger	f	SNP		G						G
ss320632265	CHEV_2_180215493	CHEVERUD	SCREENING_POP	f	SNP											C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27641940					SNP	G	G	G	G	C	G	C	G	C	C	C	G	G	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37835459	NES08681660	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180122581 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12896	CpG island 12896	1681 bp proximal