rs27642169 SNP Detail

Summary

• ID
  rs27642169
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180830982 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTCCCTC CTGCCTGCCC
  TCAGGGTATC CGGAAAGCTT GAAGAAGGCT GCCCTTAACT CCCAAACAAG TAGTCCAATG
  GAGGAGGCTC TTTTCCCCTT TGGTGGACTC AGAACAGGAA ATGAGTTTTA CTTAGGCCAG
  ATGAAGCTCA CAGAGCTGCT CCTTGTCAGC TAGAAGCTAG GGACAGCCAA CAGCTCCAGG
  Y
  GGCAAGGAGA GTGGTTCCAT CTTCCCTTCC CCTTTGTGGA TTCTCTGAAG TCTTGTCAGA
  TGTACAGCTG CAGCTGGCAA AGCTGAGAAG TGAGTATTTT AGTGACTTGC AGAAGGGTTA
  GAGAAAAGTT GTAGAGAATA ATCAGAAGTA TAAAGAATGA CGTTAAGATG ATAGTAAAGG
  AAAGATTTTG GGATCTACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832388	NES08676510	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642169					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832388	NES08676510	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180830982 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	1466 bp upstream
Cpgi12916	CpG island 12916	1175 bp distal
Gm75115	predicted gene, 75115	1476 bp upstream
Gm75119	predicted gene, 75119	within coordinates
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	418 bp downstream
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	1843 bp distal
Rr572940	regulatory region 572940	1892 bp distal
Rr572941	regulatory region 572941	1487 bp distal
Rr572942	regulatory region 572942	986 bp distal
Rr572943	regulatory region 572943	45 bp distal
Rr572944	regulatory region 572944	within coordinates
Tssr22287	transcription start site region 22287	1842 bp downstream
Tssr22288	transcription start site region 22288	1770 bp downstream
Tssr22289	transcription start site region 22289	1594 bp downstream
Tssr22290	transcription start site region 22290	1571 bp downstream
Tssr22291	transcription start site region 22291	1537 bp downstream
Tssr22292	transcription start site region 22292	1381 bp downstream
Tssr22293	transcription start site region 22293	1273 bp downstream