rs27642171 SNP Detail

Summary

• ID
  rs27642171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180830843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTCTCCCCAG GGAACTAAAG CCTGTGCCTC TGACTGCTGA
  GCCTCCCTCC TGCCTGCCCT CAGGGTATCC GGAAAGCTTG AAGAAGGCTG CCCTTAACTC
  Y
  CAAACAAGTA GTCCAATGGA GGAGGCTCTT TTCCCCTTTG GTGGACTCAG AACAGGAAAT
  GAGTTTTACT TAGGCCAGAT GAAGCTCACA GAGCTGCTCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832390	NES08676508	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642171					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832390	NES08676508	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180830843 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	1327 bp upstream
Cpgi12916	CpG island 12916	1036 bp distal
Gm75115	predicted gene, 75115	1337 bp upstream
Gm75119	predicted gene, 75119	84 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	279 bp downstream
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	1704 bp distal
Rr572940	regulatory region 572940	1753 bp distal
Rr572941	regulatory region 572941	1348 bp distal
Rr572942	regulatory region 572942	847 bp distal
Rr572943	regulatory region 572943	within coordinates
Rr572944	regulatory region 572944	95 bp proximal
Tssr22287	transcription start site region 22287	1703 bp downstream
Tssr22288	transcription start site region 22288	1631 bp downstream
Tssr22289	transcription start site region 22289	1455 bp downstream
Tssr22290	transcription start site region 22290	1432 bp downstream
Tssr22291	transcription start site region 22291	1398 bp downstream
Tssr22292	transcription start site region 22292	1242 bp downstream
Tssr22293	transcription start site region 22293	1134 bp downstream