rs27642175 SNP Detail

Summary

• ID
  rs27642175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180830559 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGGGGAAGC TGGGCCTCTG GCTGAGTTTG GGAGCTCTCA
  GTTCCTACAC AGGAACCTGG TGGGTGATCT TGGGTCAGGC CCTCCCCACT ACTTGCTGCA
  Y
  GGCTGGTTCC CCAAGGTTGG GGATACTAGC TCAGACTGAA AGAGGGTTAC AAACACAGGA
  AGTCTAGCCT CTAGGTCAGA GGGCATAGGA GCTGAGGGG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832394	NES08676501	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C	T	T	T	C	T	C	T	C	C
ss148398639	ENSMUSSNP4960298	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642175					SNP	C	C	T	T	C	C	T	T	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832394	NES08676501	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180830559 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	1043 bp upstream
Cpgi12916	CpG island 12916	752 bp distal
Gm75115	predicted gene, 75115	1053 bp upstream
Gm75119	predicted gene, 75119	368 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	within coordinates
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	1420 bp distal
Rr572940	regulatory region 572940	1469 bp distal
Rr572941	regulatory region 572941	1064 bp distal
Rr572942	regulatory region 572942	563 bp distal
Rr572943	regulatory region 572943	within coordinates
Rr572944	regulatory region 572944	379 bp proximal
Tssr22287	transcription start site region 22287	1419 bp downstream
Tssr22288	transcription start site region 22288	1347 bp downstream
Tssr22289	transcription start site region 22289	1171 bp downstream
Tssr22290	transcription start site region 22290	1148 bp downstream
Tssr22291	transcription start site region 22291	1114 bp downstream
Tssr22292	transcription start site region 22292	958 bp downstream
Tssr22293	transcription start site region 22293	850 bp downstream