rs27642190 SNP Detail

Summary

• ID
  rs27642190
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180829009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTCCGAA CCAGGCAGGA
  AAAAAGCAGC AGAGCTGGTT TCGACTGGAG CGAAACCACA GATGTTTGAT CAAGGAGGTT
  AGGGCCAATG TGGAACTTTG CAGAACCTAG CATTGCAGAA GGTAGGGTGG ATTCTTGCTC
  CGCTCGGGGT GGAGTCTAAT AGGGAAGGGC GGGACCACTT CGTGCTACTT CTGGTCTATC
  W
  GGGGAGCTCA AAAGTCTCAT GGGTGGGCCC GCTGTGAAGC GGGAGGGGCT TTGACGCGCG
  CCCCGCCTCC CAGTGGTGCG TCTTTTGCGG TGCAGGAAAG CTACTAAGTA CGCGCGTGCG
  CATAGCGCGC GTGGGTCCTA AAGTGGTGTT TCGTGGGTTA TCTTTGCAAA TGGGCTCCGC
  GGCCTAGCGC CCTGGTGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832409	NES08676470	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642190					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832409	NES08676470	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180829009 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	within coordinates
Gm75115	predicted gene, 75115	within coordinates
Gm75119	predicted gene, 75119	1918 bp upstream
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	31 bp upstream
Rr374383	regulatory region 374383	within coordinates
Rr572939	regulatory region 572939	within coordinates
Rr572940	regulatory region 572940	60 bp proximal
Rr572941	regulatory region 572941	131 bp proximal
Rr572942	regulatory region 572942	487 bp proximal
Rr572943	regulatory region 572943	1428 bp proximal
Rr572944	regulatory region 572944	1929 bp proximal
Tssr22287	transcription start site region 22287	59 bp upstream
Tssr22288	transcription start site region 22288	159 bp upstream
Tssr22289	transcription start site region 22289	293 bp upstream
Tssr22290	transcription start site region 22290	381 bp upstream
Tssr22291	transcription start site region 22291	420 bp upstream
Tssr22292	transcription start site region 22292	563 bp upstream
Tssr22293	transcription start site region 22293	661 bp upstream