rs27642196 SNP Detail

Summary

• ID
  rs27642196
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180828490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCTGGCCA GCCCTAACTT
  GATTCCCCCC AAACATGAGT CTCCGACCAA CAATGGAAGC TACTAGAGAC TGTCTCTGTT
  AGAGCTCTCT CTGACCCCAA GGCTTCGTCT GTCTTCCATC ACTCCTCTCC AAACAGAACA
  CAGGTTGGGA ATGATGAACA ACAATGCGAG TCAGGACTTG AAAGACAGAC AGCTCCTCAG
  Y
  TTACCAAGGG CAGGCTATTC CCTACAGGAC CGCTTGGGGG CTCCAGGCAC CATCCAGTGA
  GCCCAGAAAA CAGAGATTGC GATGGTAGGG AGGTGCGCGG CAACAGCTTG TGCTTACTTA
  TGTTAAACAG ATCCACTCAG TCAAGGGTCG GAGTGAGGTA CGTGGAAAAT AAAGCCTGCG
  GGGACCAGCG AAAGCAGCGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832415	NES08676460	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642196					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832415	NES08676460	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180828490 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	87 bp proximal
Gm75115	predicted gene, 75115	within coordinates
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	550 bp upstream
Rr374383	regulatory region 374383	395 bp upstream
Rr572939	regulatory region 572939	60 bp proximal
Rr572940	regulatory region 572940	579 bp proximal
Rr572941	regulatory region 572941	650 bp proximal
Rr572942	regulatory region 572942	1006 bp proximal
Rr572943	regulatory region 572943	1947 bp proximal
Tssr22287	transcription start site region 22287	578 bp upstream
Tssr22288	transcription start site region 22288	678 bp upstream
Tssr22289	transcription start site region 22289	812 bp upstream
Tssr22290	transcription start site region 22290	900 bp upstream
Tssr22291	transcription start site region 22291	939 bp upstream
Tssr22292	transcription start site region 22292	1082 bp upstream
Tssr22293	transcription start site region 22293	1180 bp upstream