rs27642199 SNP Detail

Summary

• ID
  rs27642199
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180828221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAGCCTCCT CCTGGGATCC TACTAGCCTC AGCCTAGTCG
  GTTCTCCCTG AGCCTCCAAT GAAGTCCAGC ATCTTTGGTT ATAGGAGAAG CATGCTGCAC
  K
  AAGCTGGCTC ATGATCCTCT CGGTCTGACA GAACACAGGC TGCTGAGGAA GGGAAGGGTG
  GGCAGGGCAT GCTGGCCAGC CCTAACTTGA TTCCCCCCA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832418	NES08676455	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	G	G	G		G	T	G	G	G	G	T	G	G
ss45252775	mCV22912866	ABI	CRAMUS_MOUSE	f	SNP		G	T					G		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642199					SNP	G	G	T	T	G	G	G	G	G	T	G	G	G	G	T	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832418	NES08676455	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180828221 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	356 bp proximal
Gm75115	predicted gene, 75115	within coordinates
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	819 bp upstream
Rr374383	regulatory region 374383	664 bp upstream
Rr572939	regulatory region 572939	329 bp proximal
Rr572940	regulatory region 572940	848 bp proximal
Rr572941	regulatory region 572941	919 bp proximal
Rr572942	regulatory region 572942	1275 bp proximal
Tssr22287	transcription start site region 22287	847 bp upstream
Tssr22288	transcription start site region 22288	947 bp upstream
Tssr22289	transcription start site region 22289	1081 bp upstream
Tssr22290	transcription start site region 22290	1169 bp upstream
Tssr22291	transcription start site region 22291	1208 bp upstream
Tssr22292	transcription start site region 22292	1351 bp upstream
Tssr22293	transcription start site region 22293	1449 bp upstream