rs27642200 SNP Detail

Summary

• ID
  rs27642200
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180828112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTCACTT GTACTGCTGT
  CATGTCAACT GCCCCCACCT CTTTTTCATT ACACCTTACC CATCTCCTTT ATGATCTCTA
  AACCAGCACC CCTACTGGAC CATTTCTTGT CTGGTTTTCC CGAGCCTGGA TCAATGCTTG
  CACAGAGTAG GTCTCAACAA ATCCAAGCAA AGGGTCCCAG CCAAGCAGCC TTGAGACTTC
  R
  GCGACACAAG AGCCTCCTCC TGGGATCCTA CTAGCCTCAG CCTAGTCGGT TCTCCCTGAG
  CCTCCAATGA AGTCCAGCAT CTTTGGTTAT AGGAGAAGCA TGCTGCACGA AGCTGGCTCA
  TGATCCTCTC GGTCTGACAG AACACAGGCT GCTGAGGAAG GGAAGGGTGG GCAGGGCATG
  CTGGCCAGCC CTAACTTGAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37832419	NES08676453	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642200					SNP	G	G	G	G	G	G	G	G	G	A	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37832419	NES08676453	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180828112 () rs orientation: forward

Symbol	Name	Function Class
C330003G01Rik	RIKEN cDNA C330003G01 gene	within coordinates
Cpgi12916	CpG island 12916	465 bp proximal
Gm75115	predicted gene, 75115	within coordinates
Ppdpf	pancreatic progenitor cell differentiation and proliferation factor	928 bp upstream
Rr374383	regulatory region 374383	773 bp upstream
Rr572939	regulatory region 572939	438 bp proximal
Rr572940	regulatory region 572940	957 bp proximal
Rr572941	regulatory region 572941	1028 bp proximal
Rr572942	regulatory region 572942	1384 bp proximal
Tssr22287	transcription start site region 22287	956 bp upstream
Tssr22288	transcription start site region 22288	1056 bp upstream
Tssr22289	transcription start site region 22289	1190 bp upstream
Tssr22290	transcription start site region 22290	1278 bp upstream
Tssr22291	transcription start site region 22291	1317 bp upstream
Tssr22292	transcription start site region 22292	1460 bp upstream
Tssr22293	transcription start site region 22293	1558 bp upstream