rs27642484 SNP Detail

Summary

• ID
  rs27642484
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139482728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCTGGGGA GGGGGGGGTG
  CTTGTTTTTT TGTCTTTTGA GATAATGTCT CACTCTAGTC CAGTCTGGCC TCGAACTCAC
  AACTACCCTA CCAGATCGGG TCTCGTGTTG TCTAAGGCTG CCCAGGAACT CCTCCACACA
  CAGGTAAATA TAGCCCTGTA TCCACAGGCA ACTGCTGGGA TTACAAACTC CCATGCCTGG
  Y
  TTCGGAAATA GTTACTTTAG TTTCGGGACT CAAGACCAAA TCAGGGACCC CACTGTGCCC
  TGACCCCTAC CCCTGCTGCA AGTTCTTAAA CCTCCTAGGA CTCAGTCTTC TTATCTCTAT
  AATGGGAAAA GATCCCGTTC AGACCTCCCT CCAGCCAGCC AGTCCTCCCT CCCTGCAGGC
  TTCTGCTATA ACCTGGGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37792312	NES09132203	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27642484					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37792312	NES09132203	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139482728 () rs orientation: forward

Symbol	Name	Function Class
Pax7	paired box 7	within coordinates
Rr86808	regulatory region 86808	1928 bp distal
Rr92760	regulatory region 92760	128 bp distal
Rr92761	regulatory region 92761	73 bp proximal
Rr103267	regulatory region 103267	1328 bp distal
Rr103268	regulatory region 103268	928 bp distal
Rr103269	regulatory region 103269	874 bp proximal