rs27644420 SNP Detail

Summary

• ID
  rs27644420
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173419062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTTGGGG TCACCTAAAA
  TAGATCTGGT CATGCTTGGC CTGGATTTGG GGTTTCCTAA GGTGGGTAGG ATTTTGTTTA
  GTATCTCTGG ATAGCCAGTG GGGATGGAGG ACATGGGTTC CCGAGGCAGT GGTCATTAGC
  CTAGAAACCA AGTTCAGTCT TGGTCGACTT TGTCCTGGGT CTTGAGGGTC CCAGGTCCAG
  M
  TGGCTTCTTC TGTGTTTGTG CAGACATGTA TGGACACGGT TGGTTTGAGT TTTAGGGTTG
  GGGCTCTGAG CTAGTTATTT TCAGCTTGGA GATTTGGGGT TCAATCTTAG GCAGATGTCC
  TCTGCCTTTG GGGACCTGAG GCCAACAAGG TTTGTCCCAG CTTCTGAAAT GCTCGCATAG
  ACAGGCTAAC TAGAGAATTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
ss37823248	NES08700300	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A		C	A	C
ss320625286	CHEV_2_173402770	CHEVERUD	SCREENING_POP	f	SNP									A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J
rs27644420					SNP	A	A	A	A	A	A	A	A	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37823248	NES08700300	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173419062 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	520 bp proximal
Gm74867	predicted gene, 74867	within coordinates
Gm74874	predicted gene, 74874	670 bp upstream
Rr571985	regulatory region 571985	506 bp proximal
Rr571986	regulatory region 571986	919 bp proximal
Tssr27995	transcription start site region 27995	902 bp downstream
Tssr27996	transcription start site region 27996	919 bp downstream
Tssr27997	transcription start site region 27997	934 bp downstream
Tssr27998	transcription start site region 27998	946 bp downstream
Tssr27999	transcription start site region 27999	1031 bp downstream