rs27644421 SNP Detail

Summary

• ID
  rs27644421
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173418328 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGGTATC CTTGTGTGGA
  AACAGCCATG GAGGATAGCC AGTCCTGATG GTCATATGTT TTTAGCCTGG GGGACTTGGG
  GCTCAGATTT GGTCAGGCTT GTTTTGGTTT GGGGTGGGTC CTAAGGTAGG TAAAGGATTG
  AAGTTTCAGT GTCCTCGTGT AAATGCAGCT GCTATAGGAT TTGGGGTTCT GAAGTAGTGA
  K
  AGCTAGTCTG AAGATTTTGG GGTTCAGTCT TGGGTAGGTA TATCCTGGAT TTGGGGGTAC
  CAAGTGGGAA GTATTTGTTT TACTTTTGAT ATCCTTATGA GTGAGTGGGT GGGGTACTTG
  GGTTCCTAAG AGACTGATGG CTAGCCTAGA TACTTGAGGT TCAAACCTGG GTTCATGTTT
  GTTCTGGGCT TGGGGTTCCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
ss37823249	NES08700299	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	T	G	G	G		G	T
ss320625285	CHEV_2_173402036	CHEVERUD	SCREENING_POP	f	SNP										G			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NZW/LacJ	PWD/PhJ	SM/J
rs27644421					SNP	G	G	G	G	G	T	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37823249	NES08700299	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173418328 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	1254 bp proximal
Gm74867	predicted gene, 74867	523 bp upstream
Gm74874	predicted gene, 74874	1404 bp upstream
Rr571985	regulatory region 571985	1240 bp proximal
Rr571986	regulatory region 571986	1653 bp proximal
Tssr27995	transcription start site region 27995	1636 bp downstream
Tssr27996	transcription start site region 27996	1653 bp downstream
Tssr27997	transcription start site region 27997	1668 bp downstream
Tssr27998	transcription start site region 27998	1680 bp downstream
Tssr27999	transcription start site region 27999	1765 bp downstream