rs27644422 SNP Detail

Summary

• ID
  rs27644422
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:173418153 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGTGT CTCAGAGTTG
  GGTACATAGG CTCTGTGCTG ATGCTTGTGA TGTGGGTGGA GTCTGCTCTG GGATTCAGGG
  TGCTGGTGTG GCCAGGGGCA GCTAGAGGAT ATGAGGGTCA GACATAGCAG TGTGTGGACC
  GACTGTGGGA CCCTGAGGTG GGCAGTTTGT CTCAGCTTCG GTATCCTTGT GTGGAAACAG
  Y
  CATGGAGGAT AGCCAGTCCT GATGGTCATA TGTTTTTAGC CTGGGGGACT TGGGGCTCAG
  ATTTGGTCAG GCTTGTTTTG GTTTGGGGTG GGTCCTAAGG TAGGTAAAGG ATTGAAGTTT
  CAGTGTCCTC GTGTAAATGC AGCTGCTATA GGATTTGGGG TTCTGAAGTA GTGAGAGCTA
  GTCTGAAGAT TTTGGGGTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
ss37823250	NES08700298	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C		T	T
ss320625284	CHEV_2_173401861	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J
rs27644422					SNP	C	C	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37823250	NES08700298	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:173418153 () rs orientation: forward

Symbol	Name	Function Class
Ankrd60	ankyrin repeat domain 60	within coordinates
Cpgi12846	CpG island 12846	1429 bp proximal
Gm74867	predicted gene, 74867	698 bp upstream
Gm74874	predicted gene, 74874	1579 bp upstream
Rr571985	regulatory region 571985	1415 bp proximal
Rr571986	regulatory region 571986	1828 bp proximal
Tssr27995	transcription start site region 27995	1811 bp downstream
Tssr27996	transcription start site region 27996	1828 bp downstream
Tssr27997	transcription start site region 27997	1843 bp downstream
Tssr27998	transcription start site region 27998	1855 bp downstream
Tssr27999	transcription start site region 27999	1940 bp downstream