rs27648081 SNP Detail

Summary

• ID
  rs27648081
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180599067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTTCCCT TGGCTGATTA
  GTCTATCTGT GGTAACTTGC CTTTCTGTAT CCAGAGCAGG GCCATGTCAT ATCAAGTTTC
  TGGGCTACCC CAACTTCCTG ACCTGGAGCT AAGCTGGTGT GGGTACATGG AAGAGCAGGT
  AGAATATAGA CACCAGATAT TCACACATCT CATCTACCTC ACAGTTGGAC TTTATGGCCA
  W
  CCCAGGCACT TGCTCAGTCT CATCGCCCTC CAGAGCCCCG TCTGCTCCCC GTGCCAAGCT
  CCATCTTAAC AGACTAGCAT CTATTGTTGC ATCCATTGTG ACTGTCTTTC TTATGAATAG
  GAAAGAATGT TCCTCAAGGA ACAGTGCCAC CTATTCTAAA ACTGATAATG TATTTGCAGT
  TGTACTACAG ATATCATGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37833604	NES08683188	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	A	T	T	A	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648081					SNP	T	T	T	T	T	T	A	T	T	A	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833604	NES08683188	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180599067 () rs orientation: forward

Symbol	Name	Function Class
Gm14341	predicted gene 14341	within coordinates
Rr572893	regulatory region 572893	1937 bp distal
Rr572894	regulatory region 572894	1668 bp distal