rs27648085 SNP Detail

Summary

• ID
  rs27648085
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180598245 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACAGATGTT CCCTGAATGG
  GGCAGGGGTA GAACCACATG TGGTGTTTAG AAGTCCTAAC CATCAGAGCA AGCTGTGTGA
  AGATGGCAGA ACTTCTTGGG CAGGTATTCA TGGAAAGTCA CTCTGTAAAA AGACCAGTGA
  TGTATGTTAA GTGGAAGAGA GTGCCTGACA TGCGGGGCTT AATAATTTCC TCAGGTGGGG
  S
  TCTCCTGAGC AGACTAGGAT GAACATTAGT GGTCCCTTAA CTTCAACAGA GAAATGGCAC
  TCTTCTCTAG CTATGACAGC TATACATGGT CTTCAATATT GATCACTCAG TTCTTTCTAG
  TGTGGGTTTG ATGTCATCTC AAGGGAACCA CCATGCATAT AGCCAGATGG CACAGGCCAC
  CACAAGACAC TGTGCACGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37833608	NES08683184	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	G	G		C	G	G	G		C	G	C		G
ss45361431	mCV27571836	ABI	CRAMUS_MOUSE	f	SNP	C	G					G		G
ss148394920	ENSMUSSNP2737770	ENSEMBL	ENSEMBL_Sanger	f	SNP		G
ss320632642	CHEV_2_180691157	CHEVERUD	SCREENING_POP	f	SNP												G				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs27648085					SNP	C	G	G	C	G	G	G	C	G	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833608	NES08683184	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180598245 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12910	CpG island 12910	1454 bp distal
Gm14341	predicted gene 14341	within coordinates
Nkain4	Na+/K+ transporting ATPase interacting 4	1753 bp upstream
Rr374382	regulatory region 374382	1843 bp downstream
Rr572892	regulatory region 572892	1764 bp distal
Rr572893	regulatory region 572893	1115 bp distal
Rr572894	regulatory region 572894	846 bp distal
Tssr28148	transcription start site region 28148	1782 bp upstream
Tssr28149	transcription start site region 28149	1744 bp upstream