rs27648089 SNP Detail

Summary

• ID
  rs27648089
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180597361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCACCAGT AAGTACTTCT
  CTTGTCCAGA AGGTGTGGGT CCAGGTCTAC TTAGGAACAT CACTAGGCAC TCTAATAGTA
  CACAGAACAC CCTGCTTCCC GGAGGCTTGA ACATGGGATT TAGCTAGGTT GTAGAGGAGC
  CTCATATCCA GGCAGGAATG GATAGCATGG TCAGAGGGAA GCATTGGGCT GTAGTGCAGG
  W
  CCTAGTGAAT AACGATAAAA GGCCTGTCCC TGGGGCAGGA ATCTTGTGCT AGCAGCAGAA
  GGAGGTAGAC AGGAGAACCA GTTCACACAA GGTGGTTTGG CCACAGGCTT CTGGGGGAAA
  CTGAGTCTAG GTAGCTTTGC CCTTGATTTG AGCAGCTCAG GGACAGAGAA GCAAAGCCAG
  CGTCACCCAG TTTCATGGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37833612	NES08683180	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648089					SNP	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833612	NES08683180	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180597361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12910	CpG island 12910	570 bp distal
Gm14341	predicted gene 14341	within coordinates
Nkain4	Na+/K+ transporting ATPase interacting 4	869 bp upstream
Rr374382	regulatory region 374382	959 bp downstream
Rr572892	regulatory region 572892	880 bp distal
Rr572893	regulatory region 572893	231 bp distal
Rr572894	regulatory region 572894	within coordinates
Tssr28148	transcription start site region 28148	898 bp upstream
Tssr28149	transcription start site region 28149	860 bp upstream