rs27648090 SNP Detail

Summary

• ID
  rs27648090
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180597316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTGTGTAT TGAGAGCAAG
  GACTCAGGAG CAGGAGGAAT GATGGGCTCA CCAGTAAGTA CTTCTCTTGT CCAGAAGGTG
  TGGGTCCAGG TCTACTTAGG AACATCACTA GGCACTCTAA TAGTACACAG AACACCCTGC
  TTCCCGGAGG CTTGAACATG GGATTTAGCT AGGTTGTAGA GGAGCCTCAT ATCCAGGCAG
  R
  AATGGATAGC ATGGTCAGAG GGAAGCATTG GGCTGTAGTG CAGGTCCTAG TGAATAACGA
  TAAAAGGCCT GTCCCTGGGG CAGGAATCTT GTGCTAGCAG CAGAAGGAGG TAGACAGGAG
  AACCAGTTCA CACAAGGTGG TTTGGCCACA GGCTTCTGGG GGAAACTGAG TCTAGGTAGC
  TTTGCCCTTG ATTTGAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37833613	NES08683179	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648090					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833613	NES08683179	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180597316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12910	CpG island 12910	525 bp distal
Gm14341	predicted gene 14341	within coordinates
Nkain4	Na+/K+ transporting ATPase interacting 4	824 bp upstream
Rr374382	regulatory region 374382	914 bp downstream
Rr572892	regulatory region 572892	835 bp distal
Rr572893	regulatory region 572893	186 bp distal
Rr572894	regulatory region 572894	within coordinates
Tssr28148	transcription start site region 28148	853 bp upstream
Tssr28149	transcription start site region 28149	815 bp upstream