rs27648094 SNP Detail

Summary

• ID
  rs27648094
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:180596987 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTTCTTAA AGCGGCGATG
  ACAGGACTCT CTGGCAGTAT AGAGCAGCGC AGGGCTGAAT AGTGGCCACA GGACAGACTT
  GATCTGTCAA TGAGTCTGTC CCAGAATGCT CATAAAAGAA TAATTAGCAA CTGTGTCTAC
  CCCAGATAGC TCTCGGCCTG GCTTCTGTCC CTGATCCGAA CCCTCTGGTG GGACATACAC
  Y
  TCTGCTCTGT TGAGTTCAAA CTTCTTTCTT GTGAAGGTTC AGAGGTACCC CATGAAAAGA
  GGTGTTTTCA GTGTGAAAGT CTTTAAGACG CCTCATCTTC TAGAAGCCCC GACCTGGTCC
  GGAGCTCTTT GTGTGTATTG AGAGCAAGGA CTCAGGAGCA GGAGGAATGA TGGGCTCACC
  AGTAAGTACT TCTCTTGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37833617	NES08683170	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648094					SNP	T	T	T	T	T	T	C	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833617	NES08683170	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180596987 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12910	CpG island 12910	196 bp distal
Gm14341	predicted gene 14341	within coordinates
Nkain4	Na+/K+ transporting ATPase interacting 4	495 bp upstream
Rr374382	regulatory region 374382	585 bp downstream
Rr572892	regulatory region 572892	506 bp distal
Rr572893	regulatory region 572893	within coordinates
Rr572894	regulatory region 572894	144 bp proximal
Tssr28148	transcription start site region 28148	524 bp upstream
Tssr28149	transcription start site region 28149	486 bp upstream