rs27648095 SNP Detail

Summary

• ID
  rs27648095
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180595736 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAGTGTC TTTAAAATAA
  CTTCTTCCTC AGGGACCTCC GGCTACCCAG TCTAGCAGGG TTCAGGCCCA CACCCAGCCC
  AGAAACAACA AAGCTACATT TCCTTTTTAA GACCAGATAC TTAGGACTCA TTAGCATTTA
  GCAAAGGAGT TTCCCCAGCG ACCTTTGTTT TAGCCTCTTC AACCCCAGAA CCCTTATTCC
  W
  GGCTCCAAGC TCAGGGAGAG CTGCAAAGTT GTTCAGTGTC ATTCAAGTTC TCTGACAAGG
  CTTTTCTGCT AGTGGACCTG GGCTCAACCC TAAGCATCTG GGCCTGAGAG CCCTATCCCT
  CTACAGGTCC AGGAAGATTG GGAGACTCCA AGGTAGTCTG TGCCTGCGCA CAAGCTGGGC
  ACGTCAAGTG ATCACACTCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37833618	NES08683165	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648095					SNP	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833618	NES08683165	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180595736 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12910	CpG island 12910			281 bp proximal
Gm14341	predicted gene 14341			521 bp upstream
Nkain4	Na+/K+ transporting ATPase interacting 4			Intron
				Noncoding-Transcript-Variant
Rr374382	regulatory region 374382			within coordinates
Rr572892	regulatory region 572892			within coordinates
Rr572893	regulatory region 572893			746 bp proximal
Rr572894	regulatory region 572894			1395 bp proximal
Tssr28148	transcription start site region 28148			704 bp downstream
Tssr28149	transcription start site region 28149			733 bp downstream