rs27648096 SNP Detail

Summary

• ID
  rs27648096
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180595716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGACAAAAC ACCAAATGCC
  TTAAAGTGTC TTTAAAATAA CTTCTTCCTC AGGGACCTCC GGCTACCCAG TCTAGCAGGG
  TTCAGGCCCA CACCCAGCCC AGAAACAACA AAGCTACATT TCCTTTTTAA GACCAGATAC
  TTAGGACTCA TTAGCATTTA GCAAAGGAGT TTCCCCAGCG ACCTTTGTTT TAGCCTCTTC
  R
  ACCCCAGAAC CCTTATTCCA GGCTCCAAGC TCAGGGAGAG CTGCAAAGTT GTTCAGTGTC
  ATTCAAGTTC TCTGACAAGG CTTTTCTGCT AGTGGACCTG GGCTCAACCC TAAGCATCTG
  GGCCTGAGAG CCCTATCCCT CTACAGGTCC AGGAAGATTG GGAGACTCCA AGGTAGTCTG
  TGCCTGCGCA CAAGCTGGGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37833619	NES08683162	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27648096					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833619	NES08683162	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180595716 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12910	CpG island 12910			301 bp proximal
Gm14341	predicted gene 14341			541 bp upstream
Nkain4	Na+/K+ transporting ATPase interacting 4			Intron
				Noncoding-Transcript-Variant
Rr374382	regulatory region 374382			within coordinates
Rr572892	regulatory region 572892			within coordinates
Rr572893	regulatory region 572893			766 bp proximal
Rr572894	regulatory region 572894			1415 bp proximal
Tssr28148	transcription start site region 28148			724 bp downstream
Tssr28149	transcription start site region 28149			753 bp downstream