rs27648098 SNP Detail

Summary

• ID
  rs27648098
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180595254 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTACTTGA AGCCAGAAGT
  CAAATGGAAG CAACAGGCCC TGGCCTCACC CTCTTTCACC CCAAGGCCAC ATCTCTGAAC
  TAGAGGTGGC AGAAGCACCT TCTCTCAGCC ACACATCAGA GAACATTGTC ACCAAATCCA
  GGGCAAGGAA ACCGGTCTCC CCCTCCCACA AAGCGACTCT GTTTCTTGAC TCCCACTTTG
  W
  GCAGGCTCTA AACCCGAGTC AGCGCACTTA TTCCTGTCCT TTACCTGCAG GTCATCCTGC
  AGGACTTCTC TCCATCTTCC CTTTGAGGGA CCCCTTCACA GAAAGACAAC GCTCAACACT
  GCTCCAAGGC TGGAGGCAGC AAATCGGACT TGCCCTGTAG AAACCTGCAA ACCAGTAAAA
  ACTTGGACCA TGGACCTCCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37833621	NES08683157	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs27648098					SNP	A	A	A	T	A	T	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37833621	NES08683157	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180595254 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12910	CpG island 12910			763 bp proximal
Gm14341	predicted gene 14341			1003 bp upstream
Nkain4	Na+/K+ transporting ATPase interacting 4			Intron
				Noncoding-Transcript-Variant
Rr374382	regulatory region 374382			within coordinates
Rr572892	regulatory region 572892			within coordinates
Rr572893	regulatory region 572893			1228 bp proximal
Rr572894	regulatory region 572894			1877 bp proximal
Tssr28148	transcription start site region 28148			1186 bp downstream
Tssr28149	transcription start site region 28149			1215 bp downstream