rs27652424 SNP Detail

Summary

• ID
  rs27652424
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:177770823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGACGTGGA GCCTTGGGCC
  TCCTAGTGGA GGACCATTCA TAGAACCTTC TCCAGGAGGT TCTTAGTATT CAGCAGCTCT
  GTGGCTTTCC AGCTGTAGGG ACTGGGTTAC ACTCTTCCTT GGTAGTCTCT GGTGGGAGAC
  GGCTCTCCTG TTTGAGGAGG CCCCAGGTTT TTCAGCCAGC ACGAAGGGCA TTGTACTCCC
  W
  GGATATTTGC AGAGCTGGGA ACGGATGTGG CCAGCCTGCT TGGATTTGGA TCATTTCTCC
  AGTCAATTAT TCTTTGAGTC ATGGTTTCAC TGTGTAGCCC TGGCTAACCT GGAACTACTG
  GGTAAGGCAG GCTGACCTCT AATTTGTGCC GATCCTCCTG CATCTGCCCC CAGAGTGCTG
  AGATTATACG TGCACATTGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss37849443	NES08691246	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs27652424					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37849443	NES08691246	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:177770823 () rs orientation: forward

Symbol	Name	Function Class
Phactr3	phosphatase and actin regulator 3	Intron
Rr572351	regulatory region 572351	52 bp proximal