rs27653268 SNP Detail

Summary

• ID
  rs27653268
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170128835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGACTTATC AGGTGCCTCT
  GGTTCTAAAA TGTTCATTCC CAGGGCCCTC GGAGAAACCC AGAGATGAAA TCTTCCAAGC
  TAATGATAAC ACTTCCAGTA GTTTCCACTC CAGGCAGGGC CTAATTATAT GTGATTTTTA
  CAGTAGTATC CGCAGATGAG ACAGATAAGC CGACTCCATT CTGTCTGGAG TATGTCTTGC
  R
  CGGACAACCT TAATTGAATC ACTGTTAACC CCTCCCCTTG GCTGCTAACT GGCACTCTGG
  AAGTGCCCAT CGAGGTTCAG CTATTGTCGG AGCAAAGGCT GTTACTGCTC TCTTGTTTGT
  ATTTTAGCCC GGAGACTGCA GGAGGGAAAG GCAGTTTGGC AAGTGTGTAA TGATAAAGGA
  ATCATTTGGT TTAAACACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37818305	NES08716320	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27653268					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818305	NES08716320	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170128835 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12801	CpG island 12801	471 bp proximal
Gm14270	predicted gene 14270	1035 bp downstream
Gm74849	predicted gene, 74849	within coordinates
Gm74853	predicted gene, 74853	346 bp downstream
Rr56155	regulatory region 56155	1434 bp distal
Rr56156	regulatory region 56156	within coordinates
Tssr21922	transcription start site region 21922	1935 bp downstream
Tssr21923	transcription start site region 21923	1569 bp downstream