rs27653269 SNP Detail

Summary

• ID
  rs27653269
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170127999 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGAAACAATT AATTGAGCTT ATGCCAGTCT GTCATTCATC
  CAAATTGACC AATAAAGCCT TTATTTATGC TAAAAAAAAA AAAAAAAAAA AGAGCAGCTG
  K
  GTGGTTGTTG TTTGTTTGTT TGTTTTATGT GTAACACAGG CTGCCTTCAG ACTTTCAATC
  TTCCTGCCTC GGATCCTACA GTAAGCTGTC CACTGCTGTG                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss37818306	NES08716367	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs27653269					SNP	G	G	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818306	NES08716367	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170127999 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12801	CpG island 12801	1307 bp proximal
Gm14270	predicted gene 14270	199 bp downstream
Gm74849	predicted gene, 74849	within coordinates
Gm74853	predicted gene, 74853	1182 bp downstream
Rr56155	regulatory region 56155	598 bp distal
Rr56156	regulatory region 56156	801 bp proximal
Tssr21922	transcription start site region 21922	1099 bp downstream
Tssr21923	transcription start site region 21923	733 bp downstream