rs27653270 SNP Detail

Summary

• ID
  rs27653270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170127059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTCTTTGA TCTTTTCCGA GGCTTTTTCG GCTTTCCTGG
  ACCTCGGAGC CACAGAGATC CTTTTTTTGG AGGGATGACT CGAGATGATG ACGACGATGA
  Y
  GATGATGATG ATGACGAAGC GGAGGAAGAC AGAGGCGCGT GGGGTTGAGA GAGCTATGCG
  TTTGATGGTT CTCAGCCTCC AGAGGAATTC GGTTTCAGCT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ
ss37818307	NES08716365	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	MOLF/EiJ
rs27653270					SNP	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818307	NES08716365	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170127059 () rs orientation: forward

Symbol	Name	Function Class
Gm14270	predicted gene 14270	within coordinates
Gm74849	predicted gene, 74849	within coordinates
Rr56155	regulatory region 56155	within coordinates
Rr56156	regulatory region 56156	1741 bp proximal
Rr374263	regulatory region 374263	1995 bp downstream
Tssr21922	transcription start site region 21922	159 bp downstream
Tssr21923	transcription start site region 21923	189 bp upstream