rs27653271 SNP Detail

Summary

• ID
  rs27653271
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170126464 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACCCCCTG TCTCATCCAG
  AGCTGTTACC AGAGCTGACC TGTTTCTGCC ATCCACTGTT TACCCGAGAA TCACAGTCAA
  GTCCAACTTG TTTGAAGGAT TTTATATGCC TATTAGTGTA TAAATATCCA CAGCATGTAT
  GCAGTCACAG ATATAGAGGG GGGAGACCAT CATGACAGTA CAGACCTGTT CCCACATAGA
  M
  ATCACTTTGC CAGTACTACG AAGTCCAGGG TCTGTGGGAG CCAGTCCTCC CGGGATGAGA
  GGACTCACCC AGCGTGAGCA GGCGTAACCA CTGGTACCGG GAATTTACCA GCAGTGTGAA
  GGAACCAAGC CAGACCTTAT GTGAGGGAGA AACCCGGAGA TGAAGTCTTC CAAACTAATG
  ATAACACTTC TAGTAGTTTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37818308	NES08716384	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs27653271					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37818308	NES08716384	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170126464 () rs orientation: forward

Symbol	Name	Function Class
Gm14270	predicted gene 14270	491 bp upstream
Gm74849	predicted gene, 74849	within coordinates
Rr56155	regulatory region 56155	336 bp proximal
Rr60081	regulatory region 60081	1665 bp distal
Rr374263	regulatory region 374263	1400 bp downstream
Tssr21922	transcription start site region 21922	416 bp upstream
Tssr21923	transcription start site region 21923	784 bp upstream