rs27654252 SNP Detail

Summary

• ID
  rs27654252
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181303108 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTTATA GTAAGTATCC
  CTCAGCTACT CCCCACCCAC AGCTACTCCT CACTCACAAC TACTCCCCAT CTTGTTGTCC
  CATCCTACTG TTTAGAGAAA TCAGGTATGG GACAGGTGGC AGGCAGGGAG ACAACAGGGT
  GTCCTGATTC CCACCTTCTG TTCCTCAGCT GAGGAAAGAT CAAACAAACT ACAGCCTCCT
  S
  GGACTGGAGG TAAAGCAGAG GCCTAGTTTC AGGGAATAAA TGTTGATGCC TAAGCCCTGT
  ACCAGACTAC ATATGAGAGG CTACTTGGGA ATCCTGCACC CATGACCCTC TGAGGGAGTC
  CTGAAAGCAT TAGCCTGTGG TCACCAACCA CAGAGGAATG ACCGTCCTCT TGCAGGACAA
  GGACACCCAC AGGAGTCCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850471	NES08683656	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654252					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850471	NES08683656	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181303108 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	1560 bp distal
Gm25879	predicted gene, 25879	991 bp upstream
Gm29797	predicted gene, 29797	1848 bp downstream
Gm74533	predicted gene, 74533	1942 bp upstream
Rr573063	regulatory region 573063	1452 bp distal
Rr573064	regulatory region 573064	1890 bp distal
Rr573065	regulatory region 573065	1573 bp distal
Rr573066	regulatory region 573066	1368 bp proximal