rs27654253 SNP Detail

Summary

• ID
  rs27654253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181302337 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGGTCAGGT TTAGACCCAG AGTATAGTGT ACAGGAGGGA
  AATGGAGCTT TGTGCACATC AGTATACATT CTATTCTTTG ATTCAGATTT CGAATGGTCT
  Y
  ACAAGCCATG ATAGAGCACA AATATAGAAC ATTTTGATTC TTCTTTATGG GGTAGGAGGC
  AGTGTAGACA AGTACAAGGT GGGGTGTACC AGAGAGGGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850472	NES08683655	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C		C	C	T	C	T	T	C	C
ss45336838	mCV22775469	ABI	CRAMUS_MOUSE	f	SNP		T	C				T
ss148402985	ENSMUSSNP5669428	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654253					SNP	T	T	C	C	T	C	T	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850472	NES08683655	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181302337 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	789 bp distal
Gm25879	predicted gene, 25879	1762 bp upstream
Gm29797	predicted gene, 29797	1077 bp downstream
Gm74533	predicted gene, 74533	1171 bp upstream
Rr573063	regulatory region 573063	681 bp distal
Rr573064	regulatory region 573064	1119 bp distal
Rr573065	regulatory region 573065	802 bp distal