rs27654254 SNP Detail

Summary

• ID
  rs27654254
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181302132 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTGTACCTT TCAGACAGAC AGACAAGGGA CAAAAAAGGC
  AGTCCAATCT ACAAGAGCAA GAAATAGCAC TGAAGTTCTT CATGCCTCCA TTCCTAGGTG
  Y
  AGGTGTGATC TGCCCAATGG GACCTTTTGT TTCTTTTCAG TTGAGAAAGC TGAGAGATGG
  AGAGATTGTT GTTGATTATA CAACAATCAT GTGCTGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850473	NES08683654	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	C	T	C	T	T	C	C
ss45351520	mCV22775472	ABI	CRAMUS_MOUSE	f	SNP		T	C					C
ss148402980	ENSMUSSNP6834534	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654254					SNP	T	T	C	C	T	T	C	C	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850473	NES08683654	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181302132 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	584 bp distal
Gm25879	predicted gene, 25879	1967 bp upstream
Gm29797	predicted gene, 29797	872 bp downstream
Gm74533	predicted gene, 74533	966 bp upstream
Rr573063	regulatory region 573063	476 bp distal
Rr573064	regulatory region 573064	914 bp distal
Rr573065	regulatory region 573065	597 bp distal