rs27654259 SNP Detail

Summary

• ID
  rs27654259
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181300426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCCTTTGTGG TCACTCCGAG TGCCTATGGG GCCACTTCTT
  GTGTAGGGAG GCCTATGCTC TCAGCCCTAA CCTGGTGTCT TCTCCAGGTG CGCCCAAAGC
  Y
  TGCTTTTTAC ATACTACCAC TGCTTCTGGC GTTTCTTGGA TCTGCCCTGG GCTGGCCTGG
  GTCCCAGTCT TGCAGTGTCC AGGAGGTACT CCGCCACTA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850479	NES08683648	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	C	T	C	C	T	T	C	C
ss148402945	ENSMUSSNP5202489	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654259					SNP	T	T	C	C	T	T	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850479	NES08683648	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181300426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12934	CpG island 12934	472 bp proximal
Gm29797	predicted gene, 29797	Coding-NonSynonymous
Gm74533	predicted gene, 74533	within coordinates
Rr573063	regulatory region 573063	730 bp proximal
Rr573064	regulatory region 573064	771 bp proximal
Rr573065	regulatory region 573065	1088 bp proximal
Tssr22335	transcription start site region 22335	1733 bp downstream