rs27654263 SNP Detail

Summary

• ID
  rs27654263
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181299478 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGGCTCT TGTTCTTAAT
  GTGGTCTGAT GGGCTGTTCT CAATATCCCT CCATTGGCCA TGGTACTCAG TGATTTGCAA
  GAGAGTTCTT CGGTTTGCTG TTATCCCAGG CAGAAGCCCC AACCCCCACC CATCTCTATG
  TGGGAGTTTG TGGTATGCTC AGTTCAGCTC TCCTGCCAGG GCTGGGAAGC TGAGTCCTGT
  Y
  GCTGGCCTCA CCAGATTAAT TTTCCAGCTC AAGTAGACTG CCTAACTCCA GCTGGGAGCC
  TAGAGGCAGA TTTGGGAACT AGTCCATTTG AAGGAACTGG GGTTCTGGGG ACCTTCAGTG
  TCCTCCTAAT TTGTGAGCTT TCCCCAGCAC CAGTCCTTTC CATTCAGGGT GGGAGGAAAC
  TTGGCAGGCT TTGCTTTTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850483	NES08683644	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654263					SNP	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850483	NES08683644	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181299478 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi12934	CpG island 12934			1420 bp proximal
Gm29797	predicted gene, 29797			Intron
				mRNA-UTR
Gm74533	predicted gene, 74533			within coordinates
Rr573063	regulatory region 573063			1678 bp proximal
Rr573064	regulatory region 573064			1719 bp proximal
Tssr22335	transcription start site region 22335			785 bp downstream