rs27654313 SNP Detail

Summary

• ID
  rs27654313
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181285179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAATCTCCCA AGTGCAAAGT TTACAGGCAA GAGCCTCTAA
  GCCAAAGTAA TGAAAAATGT ATTTTTACTG AAATGGTTGT TTCTATGGTT ATGCCAAGTG
  S
  TGATTTTCTG TTTTGATTTG GTTTGGGGCT CTTTAAATCA TTTATTTATT TGTTTATTTG
  TGCATTTAAT GTAAATGAGT GGTTAAGCTT CATGTGAAC                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850533	NES08684155	PERLEGEN	MM_PANEL2	f	SNP	C	G	G	C	C	G	G	C	G	G	C	C	G	G
ss148402835	ENSMUSSNP6698358	ENSEMBL	ENSEMBL_Sanger	f	SNP		G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654313					SNP	C	G	G	C	C	G	G	C	G	G	C	C	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850533	NES08684155	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181285179 () rs orientation: forward

Symbol	Name	Function Class
Prpf6	pre-mRNA splicing factor 6	Intron
Rr573060	regulatory region 573060	1089 bp proximal
Rr573061	regulatory region 573061	1172 bp proximal