rs27654315 SNP Detail

Summary

• ID
  rs27654315
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181284571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AACCTTAACC CGAGAAAGAC CTTAAAAAGG CTTCAATCTG
  TCTTTGTTTC ATGAATCTCC TTTTTATTAT TTATTTAGTT GGTTTGATAT CTGATGCTAT
  Y
  GTGGAACCAG GGACGTGGGT ATATTGGTCG GGCCCTCTAC CATTAAGCTA CGTCTCCTAC
  CCAAATCTAG ATTTTTGAGT ATTAGGGGCC AATGGTATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850535	NES08684175	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	T	C	C	C	T	C	C	T	T	C	C
ss148402815	ENSMUSSNP6614048	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C						C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654315					SNP	T	T	C	C	T	T	C	C	C	T	C	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850535	NES08684175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181284571 () rs orientation: forward

Symbol	Name	Function Class
Prpf6	pre-mRNA splicing factor 6	Intron
Rr573060	regulatory region 573060	1697 bp proximal
Rr573061	regulatory region 573061	1780 bp proximal