rs27654382 SNP Detail

Summary

• ID
  rs27654382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181222968 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGAACCTTC GGAGGAGGAA
  TTTGGCCACG GCCTCACAAA GTCTGACTCC TGGTCAGAAT GCCTGGAGTG TGTGAACTAG
  CTGGGATTCA CCTCATCCAC TGCCAGCACC TCACTTTCTA AAGGCGTCCG GGGTTACAGC
  TTCTCAGGCG GTGCACTGTG GCATGCAAAG CCGGAAGACA TTTGGCCTTC AACTGACTCA
  K
  ACAGACCGGA AGAGGTGTCA CGAGCAGTTT CCAAGCATGG TCACTGCCCC CTGGCGGCCA
  CGACCTAGAG TTGCTACAAG TGATGATCAG GCCGAGTGAA GACAAGGACC CTTAAGTCTC
  CTACTTCCTA CAAGGACCCT TATCTCCCCT TCCATTCTCC TGAAAGCCTC GAAAGTCTCA
  AAGGCCCCCA AACTCTCGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850602	NES08686883	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654382					SNP	T	T	T	T	T	T	T	T	T	G	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850602	NES08686883	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181222968 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	within coordinates
Rr397593	regulatory region 397593	within coordinates
Rr573037	regulatory region 573037	1676 bp distal
Rr573038	regulatory region 573038	within coordinates
Rr573039	regulatory region 573039	41 bp proximal
Rr573040	regulatory region 573040	823 bp proximal
Rr573041	regulatory region 573041	1328 bp proximal
Tssr22326	transcription start site region 22326	1836 bp downstream
Tssr22327	transcription start site region 22327	1808 bp downstream
Tssr22328	transcription start site region 22328	1650 bp downstream
Tssr22329	transcription start site region 22329	1622 bp downstream
Tssr22330	transcription start site region 22330	1608 bp downstream
Tssr28213	transcription start site region 28213	6 bp upstream
Tssr28214	transcription start site region 28214	725 bp downstream
Tssr28215	transcription start site region 28215	799 bp downstream
Tssr28216	transcription start site region 28216	821 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	957 bp downstream