rs27654385 SNP Detail

Summary

• ID
  rs27654385
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181222600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAATG GCGGTGCTGG CTAAGGTCAG
  W
  CAACTCCAAG GAAAAGGCCT CAGGG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850605	NES08686880	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654385					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850605	NES08686880	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181222600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	287 bp proximal
Rr397593	regulatory region 397593	279 bp upstream
Rr573036	regulatory region 573036	1746 bp distal
Rr573037	regulatory region 573037	1308 bp distal
Rr573038	regulatory region 573038	within coordinates
Rr573039	regulatory region 573039	409 bp proximal
Rr573040	regulatory region 573040	1191 bp proximal
Rr573041	regulatory region 573041	1696 bp proximal
Tssr22326	transcription start site region 22326	1468 bp downstream
Tssr22327	transcription start site region 22327	1440 bp downstream
Tssr22328	transcription start site region 22328	1282 bp downstream
Tssr22329	transcription start site region 22329	1254 bp downstream
Tssr22330	transcription start site region 22330	1240 bp downstream
Tssr28212	transcription start site region 28212	1861 bp upstream
Tssr28213	transcription start site region 28213	323 bp downstream
Tssr28214	transcription start site region 28214	1093 bp downstream
Tssr28215	transcription start site region 28215	1167 bp downstream
Tssr28216	transcription start site region 28216	1189 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	1325 bp downstream