rs27654387 SNP Detail

Summary

• ID
  rs27654387
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181222404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCCTGTA ATTTGCATCC
  CCCATATCTT AGAAACCAGA ATGAAAGGCC TACAGCAGAG ACTGAAGAGA GGAAGGCTCA
  TCACTTGGAC CACCAAAGAA AGGTCTCAAG ATCCCTCTGC TATGGTTAAA TCTAGTCAAG
  CAACCCATCC CGGTGCTACT GTGGAATTCC TGCAAGAGGC AGAAGGCGGT TCAGAGTCAT
  S
  AAAGCCATTT TTACAAGGTA GACATAGGAC TGGGGGATTA AAGGCTTTCA TGGCCTCACT
  TGCCAACCTG CCTCCCCCCC CCCCCCCCAA GGCTCTGGGT GAGTACCTAT TAACTTCTCT
  CCACTCTCTA ATCCCAAATC CATCTCCACT TTGCATATCG ACATGAAAGC CAATGGCGGT
  GCTGGCTAAG GTCAGACAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850607	NES08686878	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654387					SNP	C	C	C	C	C	C	C	C	C	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850607	NES08686878	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181222404 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	483 bp proximal
Rr397593	regulatory region 397593	475 bp upstream
Rr573036	regulatory region 573036	1550 bp distal
Rr573037	regulatory region 573037	1112 bp distal
Rr573038	regulatory region 573038	within coordinates
Rr573039	regulatory region 573039	605 bp proximal
Rr573040	regulatory region 573040	1387 bp proximal
Rr573041	regulatory region 573041	1892 bp proximal
Tssr22326	transcription start site region 22326	1272 bp downstream
Tssr22327	transcription start site region 22327	1244 bp downstream
Tssr22328	transcription start site region 22328	1086 bp downstream
Tssr22329	transcription start site region 22329	1058 bp downstream
Tssr22330	transcription start site region 22330	1044 bp downstream
Tssr28212	transcription start site region 28212	1665 bp upstream
Tssr28213	transcription start site region 28213	519 bp downstream
Tssr28214	transcription start site region 28214	1289 bp downstream
Tssr28215	transcription start site region 28215	1363 bp downstream
Tssr28216	transcription start site region 28216	1385 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	1521 bp downstream