rs27654391 SNP Detail

Summary

• ID
  rs27654391
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181221931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCAAAAAG GCCACAGGTC
  TGTGGGAAGC TAACATCGTG CTGGTCTTAG AAAGGGAAGG CTTTACTTAA TTCCAGATTT
  GTTACTGCTT ACAGAATAGA CCTGTCCCAC CTATTGATTC ACTAGACTTG GCTCCAAAAT
  ACCACACCCT GACCCCAGAA CTTCATCTTT ACCTAAGATA CACCAGGCTA CCTGGCTACT
  R
  CACTCCTTAA CTTCCATCTT TGAGGTTTTC TTCTTTCAGG GCTCCATTTT AGGCCTCAGG
  GCTGTCTGAG GTAGGTGGTG CTGGAAGCTG CTGCTCAGTT TTCATTTTCC CCTGGCTATC
  CCTTAGGTAA CAGCGCTGTC ATCTATGGCT CAAAGCCACT CACCAGGGAG TTGCTGCAGA
  CCTGTATGTA TCCTTATACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850611	NES08686874	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654391					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850611	NES08686874	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181221931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	956 bp proximal
Rr56332	regulatory region 56332	69 bp proximal
Rr397593	regulatory region 397593	948 bp upstream
Tssr22325	transcription start site region 22325	1764 bp downstream
Tssr22326	transcription start site region 22326	799 bp downstream
Tssr22327	transcription start site region 22327	771 bp downstream
Tssr22328	transcription start site region 22328	613 bp downstream
Tssr22329	transcription start site region 22329	585 bp downstream
Tssr22330	transcription start site region 22330	571 bp downstream
Tssr28212	transcription start site region 28212	1192 bp upstream
Tssr28213	transcription start site region 28213	992 bp downstream
Tssr28214	transcription start site region 28214	1762 bp downstream
Tssr28215	transcription start site region 28215	1836 bp downstream
Tssr28216	transcription start site region 28216	1858 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates
Zfp512b	zinc finger protein 512B	1994 bp downstream