rs27654393 SNP Detail

Summary

• ID
  rs27654393
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181221420 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGAAAT CCCTTTATTG
  ACTTAAGATC TAATCAGAGA GGTTTTGCTG GCTTTGGGGT TCTCGTCAAG GGGTGGGCTG
  GCCTCATTGC AACCTCATCC TACCTGGCTG GCCTACAGCA CTAAGTCTGG CAGGGCTCAG
  AGAAGGAAGC TTCCAAGTGG ACTTCATGCA TCTGAAAAGG AGCCACTCTG GGAGCCGCCT
  Y
  GGAGGCAGCT CTTCTCACTA CCTAGGTAAC TTGTGGGTAT GTCTACATCC CCAGACACCA
  GGAGCAGGAA GAGCCAATCT CTGTTTGCAT GTGCATGTAT GTGTTTATAG TTTGTCTGTC
  CCTCTGACTC TACCCTTAGA TATGGTTGGC TGGATATGCC CTAGGATTGC TCTGGGAGGC
  TAATATTGTT CTGGGCAGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850613	NES08686872	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654393					SNP	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850613	NES08686872	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181221420 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12930	CpG island 12930	1467 bp proximal
Rr397593	regulatory region 397593	1459 bp upstream
Tssr22325	transcription start site region 22325	1253 bp downstream
Tssr22326	transcription start site region 22326	288 bp downstream
Tssr22327	transcription start site region 22327	260 bp downstream
Tssr22328	transcription start site region 22328	102 bp downstream
Tssr22329	transcription start site region 22329	74 bp downstream
Tssr22330	transcription start site region 22330	60 bp downstream
Tssr28212	transcription start site region 28212	681 bp upstream
Tssr28213	transcription start site region 28213	1503 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	within coordinates