rs27654395 SNP Detail

Summary

• ID
  rs27654395
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181220565 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCCTGAGAT CCTGATGCCA
  GGGTAAGCTG GGGGACTGCT CATAGCCAAA GATGCAGGTA AGCACAGAGG GCTCAGAGGT
  GGATGTCCCT GGACAGTGGG ATGACCCAGG TATGTGTGGT ATAGGTTCTA TCAGTTAGAG
  TATCACTACC TCTTAGAATT ACAGTTGTCT CTAAAGACAG CTTGGGAGTT CTAGCCACCT
  R
  AACTGGTCTT CCATGGGTGG AACCACTCCT ATGGGCAGCC CAGCTGAAGA GCTAGGGGGG
  TTGGACCCCT ACTTGCAGAA GTAGGTTGCT ATATACAGGG AGTAGGGCAC AGCAGCTAGG
  AGGCCCTGGG AGCCCTACTG CACTAAGGAA ACACACTCAA TGCTAGTCTC AGAGGCTAAG
  GCCACACACA CACATAAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850615	NES08686870	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654395					SNP	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850615	NES08686870	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181220565 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr573033	regulatory region 573033			1803 bp distal
Rr573034	regulatory region 573034			1306 bp distal
Rr573035	regulatory region 573035			251 bp distal
Rr573036	regulatory region 573036			within coordinates
Rr573037	regulatory region 573037			349 bp proximal
Rr573038	regulatory region 573038			1801 bp proximal
Tssr22325	transcription start site region 22325			398 bp downstream
Tssr22326	transcription start site region 22326			543 bp upstream
Tssr22327	transcription start site region 22327			584 bp upstream
Tssr22328	transcription start site region 22328			736 bp upstream
Tssr22329	transcription start site region 22329			765 bp upstream
Tssr22330	transcription start site region 22330			790 bp upstream
Tssr28212	transcription start site region 28212			134 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1			Intron
				mRNA-UTR
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand			within coordinates