rs27654396 SNP Detail

Summary

• ID
  rs27654396
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181220051 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCGCTGCTG ATGGGAAGAG
  TGCCCAGTTG CAAATAGATC AGGGAGGACT TTGCCAGAAA TCTGCTTCAC CCTGACTGGG
  CTATCAGGCT GTGTCTGTAC CAAGCCCAAC TCCCCTGCCC TCCCCAAAGT TAACAGCTAT
  CTCCTACAGC CAGAGATAAG GCAGCACCCA TTTCTCACAA AAGGTGCCCC TTGATGGGAA
  M
  GTTGCACAAA ATACTTCATT TCTTATCTAC AGACAAAGGG GCTTCTGGCC ACAATGCCAA
  CTTCAGCTGT ACGAACAGTA TTAAAGAGCC ACAGTGAACA CAAGATGCTA TCAGAACCCA
  CAGCCCCAAG CCAGCGCCAG CCACATCTGC AGCCGAAAGA GCTCCCAGGA GCACCTGGCA
  GCTTGTTTGT TTTCAGATAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850616	NES08686869	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654396					SNP	A	A	A	A	A	A	A	A	A	C	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850616	NES08686869	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181220051 () rs orientation: forward

Symbol	Name	Function Class
Rr56332	regulatory region 56332	1949 bp proximal
Tssr22325	transcription start site region 22325	104 bp upstream
Tssr22326	transcription start site region 22326	1057 bp upstream
Tssr22327	transcription start site region 22327	1098 bp upstream
Tssr22328	transcription start site region 22328	1250 bp upstream
Tssr22329	transcription start site region 22329	1279 bp upstream
Tssr22330	transcription start site region 22330	1304 bp upstream
Tssr28212	transcription start site region 28212	648 bp downstream
Uckl1	uridine-cytidine kinase 1-like 1	within coordinates
Uckl1os	uridine-cytidine kinase 1-like 1, opposite strand	222 bp upstream