rs27654405 SNP Detail

Summary

• ID
  rs27654405
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:181217992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAAGTTC AATGCTCTGT
  GTCATCTTCC TATTACCTGC TGTTTGTCTG AGGTACACCC TGATGCAAAA GTGCTAAGAG
  AACGAGACAT ATGTTTAACA GAGGCAATTT CTGAAAGAAA ACTGCCTGAA AAGAAGCCTG
  GGCAGATCAC ATCATCCTAG TCTCAGCTTT CAAACTTCTC AAGAAGCTCT CAGGTCAGTG
  Y
  CCTAGCAAGC TACGGCTCAC CTGTGTAGGA CTAAATTGAA CTGTAGCCAC TGACTGAATA
  GGACAGTGTT TAGTGGGTAG GAGGGGGTGC CTATAGAAAT GGCAGGTGGA CATGCCAGAC
  TAGCTCTGTG TGGGATGCCT CCTACAGTGG CTGGTATAGT CTACAGTATC ACAAACAAAC
  AAACAAAACA CTGTATGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37850625	NES08686860	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs27654405					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37850625	NES08686860	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181217992 () rs orientation: forward

Symbol	Name	Function Class
Rr573033	regulatory region 573033	506 bp proximal
Rr573034	regulatory region 573034	1000 bp proximal
Rr573035	regulatory region 573035	1822 bp proximal
Uckl1	uridine-cytidine kinase 1-like 1	Intron